Package: ecostate 0.2.0

ecostate: State-Space Mass-Balance Model for Marine Ecosystems

Fits a state-space mass-balance model for marine ecosystems, which implements dynamics derived from `Ecopath with Ecosim` (`EwE`) <https://ecopath.org/> while fiting to time-series of fishery catch, biomass indices, age-composition samples, and weight-at-age data. `Ecostate` fits biological parameters (e.g., equilibrium mass) and measurement parameters (e.g., catchability coefficients) jointly with residual variation in process errors, and can include Bayesian priors for parameters.

Authors:James T. Thorson [aut, cre]

ecostate_0.2.0.tar.gz
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ecostate_0.2.0.tar.gz(r-4.5-noble)ecostate_0.2.0.tar.gz(r-4.4-noble)
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ecostate.pdf |ecostate.html
ecostate/json (API)
NEWS

# Install 'ecostate' in R:
install.packages('ecostate', repos = c('https://james-thorson-noaa.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/james-thorson-noaa/ecostate/issues

Pkgdown site:https://james-thorson-noaa.github.io

Datasets:

On CRAN:

5.96 score 13 stars 6 scripts 150 downloads 13 exports 42 dependencies

Last updated 30 days agofrom:38867df53b. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 20 2025
R-4.5-winOKFeb 20 2025
R-4.5-macOKFeb 20 2025
R-4.5-linuxOKFeb 20 2025
R-4.4-winOKFeb 20 2025
R-4.4-macOKFeb 20 2025
R-4.3-winOKFeb 20 2025
R-4.3-macOKFeb 20 2025

Exports:abm3pc_sysadd_equilibriumcompute_nllcompute_tracerdBdtddirmultecostateecostate_controlode23plot_foodwebprint_ecoparsrk4sysstanza_settings

Dependencies:backportscheckmateclicodacolorspacecpp11fansifarverggnetworkggplot2ggrepelgluegtableigraphisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnetworknlmepillarpkgconfigR6RColorBrewerRcppRcppEigenrlangRTMBscalessnastatnet.commontibbleTMButf8vctrsviridisLitewithr

Model of Intermediate Complexity

Rendered frommodel_of_intermediate_complexity.Rmdusingknitr::rmarkdownon Feb 20 2025.

Last update: 2024-11-19
Started: 2024-11-19