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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "phylosem" in publications use:'
type: software
license: GPL-3.0-only
title: 'phylosem: Phylogenetic Structural Equation Model'
version: 1.1.4
doi: 10.1111/2041-210X.14076
identifiers:
- type: doi
  value: 10.32614/CRAN.package.phylosem
abstract: Applies phylogenetic comparative methods (PCM) and phylogenetic trait imputation
  using structural equation models (SEM), extending methods from Thorson et al. (2023)
  <https://doi.org/10.1111/2041-210X.14076>. This implementation includes a minimal
  set of features, to allow users to easily read all of the documentation and source
  code. PCM using SEM includes phylogenetic linear models and structural equation
  models as nested submodels, but also allows imputation of missing values. Features
  and comparison with other packages are described in Thorson and van der Bijl (2023)
  <https://doi.org/10.1111/jeb.14234>.
authors:
- family-names: Thorson
  given-names: James
  email: James.Thorson@noaa.gov
  orcid: https://orcid.org/0000-0001-7415-1010
preferred-citation:
  type: article
  title: Identifying direct and indirect associations among traits by merging phylogenetic
    comparative methods and structural equation models
  authors:
  - family-names: Thorson
    given-names: J. T.
  - family-names: Maureaud
    given-names: A. A.
  - family-names: Frelat
    given-names: R.
  - family-names: Mérigot
    given-names: B.
  - family-names: Bigman
    given-names: J. S.
  - family-names: Friedman
    given-names: S. T.
  - family-names: Palomares
    given-names: M. L. D.
  - family-names: Pinsky
    given-names: M. L.
  - family-names: Price
    given-names: S. A.
  - family-names: Wainwright
    given-names: P.
  journal: Methods in Ecology and Evolution
  volume: '14'
  issue: '5'
  year: '2023'
  doi: 10.1111/2041-210X.14076
  url: https://doi.org/10.1111/2041-210X.14076
  start: 1259–1275
repository: https://james-thorson-noaa.r-universe.dev
repository-code: https://github.com/James-Thorson-NOAA/phylosem
commit: 5ac1104dbc4fbd6f05b8f6153ed9335e373f8ea4
url: https://james-thorson-noaa.github.io/phylosem/
date-released: '2024-04-02'
contact:
- family-names: Thorson
  given-names: James
  email: James.Thorson@noaa.gov
  orcid: https://orcid.org/0000-0001-7415-1010
references:
- type: article
  title: 'phylosem: A fast and simple R package for phylogenetic inference and trait
    imputation using phylogenetic structural equation models'
  authors:
  - family-names: Thorson
    given-names: James T.
  - family-names: Bijl
    given-names: '& Wouter'
    name-particle: van der
  journal: Journal of Evolutionary Biology
  volume: '36'
  issue: '10'
  year: '2023'
  doi: 10.1111/jeb.14234
  url: https://doi.org/10.1111/jeb.14234
  start: 1357-1364