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Thorson ", "committer": "GitHub ", "message": "Dev (#59)\n\n* Attempt fix for SAN error\n\n* add SAN check to github actions\n\n* try to fix SAN check on github actions\n\n* add trailing / for urls\n\n* try fixing SAN on Github Actions\n\n* try again with SAN\n\n* Update R-CMD-check.yaml\n\n* Update R-CMD-check.yaml\n\n* another attempted fix for CI\n\n* undo attempt at SAN\n\n* fresh attempt at SAN on github actions\n\n* try stand-alone SAN check yaml\n\n* try fixing san-check\n\n* revert the R-CMD-check\n\n* Update san-check.yaml\n\n* try again\n\n* partial revert\n\n* try again\n\n* intentionally cause error for SAN to detect\n\n* re-add examples and tests for SAN\n\n* try instead\n\n* try to replicate CRAN error in SAN Action\n\n* switch image to replicate Ripley message\n\n* see if update fixes problem\n\n* Update NEWS.md\n\n* Update san-check.yaml\n\n* try replacing R_IsNA\n\n* try using `error_on = \"warning\" `\n\n* add manual SAN with vignettes\n\n* try changing NA to NA_integer_ ...\n\n... so that SAN doesn't have a warning when NA is passed to DATA_IMATRIX\n\n* try --ignore-vignettes\n\n* Update NEWS.md\n\n* try again\n\n* intentionally cause nan error again ...\n\n... to see if SAN detects it correctly\n\n* try to get Action error for nan detection\n\n* re-fix the nan issue\n\n* another attempted fix\n\n* fix error due to switch NA to -1\n\n* small format changes\n\n* further small format edits\n\n* another attempt\n\n* another fix\n\n* removing as_sem ...\n\n... because sem::sem(.) appears to cause UBSAN warning\n\n* Update NEWS.md\n\n* Update _pkgdown.yml\n\n* remove sem from IMPORTS\n\n* continue last commit\n\n---------\n\nCo-authored-by: Jim Thorson <50178738+James-Thorson-NOAA@users.noreply.github.com>\nCo-authored-by: James Thorson ", "time": 1778792780 }, "_maintainer": { "name": "James Thorson", "email": "james.thorson@noaa.gov", "login": "james-thorson-noaa", "orcid": "0000-0001-7415-1010", "uuid": 50178738 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "TMB", "version": ">= 1.9.18", "role": "LinkingTo" }, { "package": "RcppEigen", "role": "LinkingTo" }, { "package": "TMB", "version": ">= 1.9.18", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "igraph", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "RTMB", "version": ">= 1.7.0", "role": "Imports" }, { "package": "ggraph", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "AER", "role": "Suggests" }, { "package": "phylopath", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "reshape", "role": "Suggests" }, { "package": "gridExtra", "role": "Suggests" }, { "package": "dynlm", "role": "Suggests" }, { "package": "MARSS", "role": "Suggests" }, { "package": "ggpubr", "role": "Suggests" }, { "package": "vars", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "DHARMa", "role": "Suggests" }, { "package": "rstan", "role": "Enhances" }, { "package": "tmbstan", "role": "Enhances" } ], "_owner": "james-thorson-noaa", "_selfowned": true, "_usedby": 1, "_updates": [ { "week": "2025-38", "n": 1 }, { "week": "2025-50", "n": 1 }, { "week": "2026-15", "n": 1 }, { "week": "2026-16", "n": 1 }, { "week": "2026-17", "n": 1 }, { "week": "2026-19", "n": 3 }, { "week": "2026-20", "n": 2 } ], "_tags": [ { "name": "1.7.0", "date": "2025-09-16" }, { "name": "2.0.0", "date": "2026-05-12" }, { "name": "2.0.1", "date": "2026-05-14" } ], "_stars": 18, "_contributors": [ { "user": "james-thorson-noaa", "count": 57, "uuid": 50178738 }, { "user": "james-thorson", "count": 10, "uuid": 7989837 }, { "user": "olivroy", "count": 1, "uuid": 52606734 } ], "_userbio": { "uuid": 50178738, "type": "user", "name": "James T. 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